Google Summer of Code 2013

Thu 06 June 2013 by Kemal Eren

This summer I will be participating in the Google Summer of Code by implementing biclustering algorithms for scikit-learn. As required by the Python Foundation, I will be reporting my progress on this blog.

Biclustering paper accepted

Mon 21 May 2012 by Kemal Eren

Our paper, A Comparative Analysis of Biclustering Algorithms for Gene Expression Data has been accepted by Briefings in Bioinformatics.

New position at Heidelberg University

Thu 29 March 2012 by Kemal Eren

On 7 March 2012 I successfully defended my Master’s Thesis, Application of biclustering algorithms to biological data, which will soon be available at the OhioLINK ETD Center.

Next month I will officially begin a new position in the Multidimensional Image Processing lab at Heidelberg University.

New software: BiBench

Tue 13 December 2011 by Kemal Eren

My associates and I at the HPC Lab have just released some new software: BiBench, a Python package for biclustering. In addition to lots of other functionality, It provides a common interface to twelve biclustering algorithms, including our own CPB algorithm.

BiBench makes biclustering gene expression datasets easy. In only ...

We got runner up for best poster at ACM BCB 2011

Sun 07 August 2011 by Kemal Eren

I just got back from presenting a poster at the ACM Conference on Bioinformatics, Computational Biology and Biomedicine in Chicago, IL. We were voted runner up for best poster! The poster will soon be available at the HPC lab website.