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. ilastik: interactive machine learning for (bio)image analysis. Nature Methods, 2019.

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. Long Read Amplicon Denoising. Nucleic Acids Research, 2019.

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. Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons. bioRxiv, 2017.

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. HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. Immunity, 2017.


. Antibody 10-1074 suppresses viremia in HIV-1-infected individuals. Nature Medicine, 2017.


. Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples . Virus Evolution, 2016.


. Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch. Immunity, 2016.


. Gene-Wide Identification of Episodic Selection. Molecular Biology and Evolution, 2016.

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. Querying Co-regulated Genes on Diverse Gene Expression Datasets Via Biclustering. Microarray Data Analysis, 2015.

. A comparative analysis of biclustering algorithms for gene expression data. Briefings in Bioinformatics, 2012.

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